SNP Report
Basic Infomation
| Name | rs4379550 dbSNP |
|---|---|
| Location | chr:9,139376426 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 32)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10735662 | 0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10781497 | 0.81[CHB][hapmap] |
| rs10781542 | 0.96[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10781543 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs10870065 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs10870069 | 0.81[CHB][hapmap] |
| rs10870070 | 0.81[CHB][hapmap] |
| rs10870071 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs10870194 | 0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.87[TSI][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs10870203 | 0.81[CHB][hapmap] |
| rs11145756 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.97[GIH][hapmap];0.93[JPT][hapmap];0.88[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes] |
| rs11145760 | 1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs11146030 | 0.81[CHB][hapmap] |
| rs1127152 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs1127162 | 0.81[CHB][hapmap] |
| rs1128874 | 0.96[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs35763810 | 0.87[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs36066734 | 0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs3812590 | 0.81[CHB][hapmap] |
| rs3812592 | 0.81[CHB][hapmap] |
| rs4378078 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4487900 | 0.83[MEX][hapmap] |
| rs4582662 | 0.81[CHB][hapmap] |
| rs6560632 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7020201 | 0.89[ASN][1000 genomes] |
| rs7045859 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7851507 | 0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs7863766 | 0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs7874956 | 0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8413 | 0.92[CEU][hapmap];0.87[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.92[MEX][hapmap];0.80[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs9657743 | 0.81[CHB][hapmap] |
| rs9657744 | 0.81[CHB][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SEC16A | Proximal transcriptional regulation |
| C9orf163 | Proximal transcriptional regulation |
| GPSM1 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| AGPAT2 | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| CARD9 | Distal transcriptional regulation |
| ENSG00000228401 | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| TMEM141 | Distal transcriptional regulation |
| ENSG00000227512 | Distal transcriptional regulation |
| MIR4673 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 13)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014