SNP Report
Basic Infomation
| Name | rs7045859 dbSNP |
|---|---|
| Location | chr:9,139377938 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10735662 | 0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs10781542 | 0.96[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs10870065 | 0.83[EUR][1000 genomes] |
| rs10870071 | 0.92[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs10870194 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs11145756 | 0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[JPT][hapmap];0.88[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs11145760 | 0.92[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes] |
| rs1127152 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.90[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs1128874 | 0.96[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.80[EUR][1000 genomes] |
| rs35763810 | 0.80[EUR][1000 genomes] |
| rs36066734 | 0.83[EUR][1000 genomes] |
| rs4378078 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs4379550 | 1.00[ASW][hapmap];0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs6560632 | 0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7851507 | 0.83[EUR][1000 genomes] |
| rs7863766 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes] |
| rs7874956 | 0.81[EUR][1000 genomes] |
| rs8413 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C9orf163 | Proximal transcriptional regulation |
| CLCF1 | Distal transcriptional regulation |
| RPLP0 | Distal transcriptional regulation |
| PYGL | Distal transcriptional regulation |
| RPL3 | Distal transcriptional regulation |
| SNORD43 | Distal transcriptional regulation |
| NFKBIZ | Distal transcriptional regulation |
| GPSM1 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| FAM69B | Distal transcriptional regulation |
| ENSG00000221693 | Distal transcriptional regulation |
| AGPAT2 | Distal transcriptional regulation |
| SNORA43 | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| HIST2H2BE | Distal transcriptional regulation |
| HIST2H2AC | Distal transcriptional regulation |
| BOLA1 | Distal transcriptional regulation |
| ENSG00000267845 | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| SNAPC4 | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| MIR4673 | Distal transcriptional regulation |
| TMEM141 | Distal transcriptional regulation |
| ENSG00000227512 | Distal transcriptional regulation |
| KLF7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014