SNP Report
Basic Infomation
| Name | rs7020201 dbSNP |
|---|---|
| Location | chr:9,139377498 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10870065 | 0.83[ASN][1000 genomes] |
| rs10870071 | 0.86[ASN][1000 genomes] |
| rs11145756 | 0.83[ASN][1000 genomes] |
| rs11145760 | 0.86[ASN][1000 genomes] |
| rs1127152 | 0.84[ASN][1000 genomes] |
| rs36066734 | 0.84[ASN][1000 genomes] |
| rs4378078 | 0.89[ASN][1000 genomes] |
| rs4379550 | 0.89[ASN][1000 genomes] |
| rs6560632 | 0.89[ASN][1000 genomes] |
| rs7863766 | 0.87[ASN][1000 genomes] |
| rs7874956 | 0.84[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| C9orf163 | Proximal transcriptional regulation |
| WDR74 | Distal transcriptional regulation |
| CLCF1 | Distal transcriptional regulation |
| RPLP0 | Distal transcriptional regulation |
| PYGL | Distal transcriptional regulation |
| GPSM1 | Distal transcriptional regulation |
| SDCCAG3 | Distal transcriptional regulation |
| PMPCA | Distal transcriptional regulation |
| INPP5E | Distal transcriptional regulation |
| SEC16A | Distal transcriptional regulation |
| EGFL7 | Distal transcriptional regulation |
| SNORA17 | Distal transcriptional regulation |
| SNHG7 | Distal transcriptional regulation |
| FAM69B | Distal transcriptional regulation |
| ENSG00000221693 | Distal transcriptional regulation |
| AGPAT2 | Distal transcriptional regulation |
| SNORA43 | Distal transcriptional regulation |
| NOTCH1 | Distal transcriptional regulation |
| ENSG00000237886 | Distal transcriptional regulation |
| MIR4674 | Distal transcriptional regulation |
| ENSG00000267845 | Distal transcriptional regulation |
| DNLZ | Distal transcriptional regulation |
| CARD9 | Distal transcriptional regulation |
| SNAPC4 | Distal transcriptional regulation |
| ENSG00000228401 | Distal transcriptional regulation |
| MIR4673 | Distal transcriptional regulation |
| TMEM141 | Distal transcriptional regulation |
| ENSG00000227512 | Distal transcriptional regulation |
| KLF7 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| INPP5E | Pritchard |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014