SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 18)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs11227147	0.83[MEX][hapmap]
rs184734	0.88[AMR][1000 genomes]
rs1858783	0.82[MEX][hapmap]
rs239253	0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs239254	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs239255	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs239256	1.00[ASW][hapmap];1.00[CEU][hapmap];0.95[CHB][hapmap];0.85[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];1.00[YRI][hapmap];0.81[AFR][1000 genomes];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2513087	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs2904980	0.82[MEX][hapmap]
rs514076	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs533420	1.00[YRI][hapmap]
rs542380	0.83[MEX][hapmap]
rs554122	0.82[MEX][hapmap]
rs5858	0.80[ASW][hapmap]
rs629710	0.80[ASW][hapmap]
rs668735	0.82[MEX][hapmap]
rs676573	0.81[CEU][hapmap]
rs7116156	0.83[MEX][hapmap]

rSNP related genes

Symbol	Regulation type
CAPN1	Distal transcriptional regulation
ENSG00000254614	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 1)