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rVarBase
SNP Report
Basic Infomation
Name
rs2513087  
dbSNP
Location
chr:11,64992238
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 7)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs184734
0.88[AMR][1000 genomes]
rs239253
0.95[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs239254
0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs239255
0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs239256
0.90[AFR][1000 genomes];0.88[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs2904978
0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs514076
0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
SLC22A20
Distal transcriptional regulation
LTBP3
Distal transcriptional regulation
CDC42EP2
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)