SNP Report
Basic Infomation
| Name | rs239253 dbSNP |
|---|---|
| Location | chr:11,64984743 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 12)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11227147 | 0.82[GIH][hapmap] |
| rs184734 | 0.90[AMR][1000 genomes] |
| rs239254 | 0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs239255 | 0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs239256 | 0.88[ASW][hapmap];1.00[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs239260 | 0.80[AMR][1000 genomes] |
| rs2513087 | 0.95[AMR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2904978 | 0.87[ASW][hapmap];1.00[CEU][hapmap];0.82[CHB][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.92[TSI][hapmap];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs514076 | 1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs600135 | 0.84[GIH][hapmap] |
| rs676573 | 0.81[CEU][hapmap] |
| rs7116156 | 0.84[GIH][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| SLC22A20 | Proximal transcriptional regulation |
| CAPN1 | Distal transcriptional regulation |
| SLC22A20 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 6)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014