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rVarBase
SNP Report
Basic Infomation
Name
rs629710  
dbSNP
Location
chr:11,65109233
Allele
A/C
LD-proxy of rSNPs(r
2
>0.8) (count: 4)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs2904978
0.80[ASW][hapmap]
rs4930290
0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs533420
0.90[JPT][hapmap]
rs5858
1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[LWK][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
DPF2
Proximal transcriptional regulation
TIGD3
Distal transcriptional regulation
DPF2
Distal transcriptional regulation
MALAT1
Distal transcriptional regulation
ENSG00000270117
Distal transcriptional regulation
DPF2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 4)
eQTL related gene
Source
RPS6KB2
SCAN
SLC22A25
SCAN
FERMT3
SCAN
POLA2
SCAN