SNP Report
Basic Infomation
| Name | rs2842329 dbSNP |
|---|---|
| Location | chr:14,69017595 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10134446 | 0.88[JPT][hapmap] |
| rs1023529 | 0.85[CHB][hapmap];0.90[CHD][hapmap];0.94[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs11158749 | 0.81[JPT][hapmap] |
| rs1476586 | 1.00[CHB][hapmap];0.87[CHD][hapmap];0.83[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs1859302 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2040782 | 0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2079211 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs2158358 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.82[GIH][hapmap];0.94[JPT][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.96[TSI][hapmap];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes] |
| rs2189517 | 0.81[JPT][hapmap] |
| rs2244814 | 0.89[CHB][hapmap];0.84[GIH][hapmap];0.91[MEX][hapmap];0.82[AMR][1000 genomes];0.81[ASN][1000 genomes] |
| rs2247048 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2525521 | 1.00[CHB][hapmap];0.94[JPT][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs2525522 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2525523 | 0.87[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2525524 | 0.84[CEU][hapmap];0.92[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2525525 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.94[JPT][hapmap];0.91[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2525526 | 1.00[CHB][hapmap];0.94[JPT][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2525527 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.87[JPT][hapmap];0.86[MEX][hapmap];0.93[MKK][hapmap];0.86[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2842325 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs2842331 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.86[GIH][hapmap];0.93[JPT][hapmap];0.90[MEX][hapmap];0.97[MKK][hapmap];0.87[AMR][1000 genomes];0.90[ASN][1000 genomes] |
| rs2842338 | 0.83[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7140266 | 0.88[JPT][hapmap] |
| rs757370 | 1.00[CEU][hapmap];0.90[CHB][hapmap];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
| rs916962 | 1.00[ASW][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.83[GIH][hapmap];0.87[JPT][hapmap];0.90[MEX][hapmap];0.87[AMR][1000 genomes];0.88[ASN][1000 genomes] |
| rs929285 | 1.00[CEU][hapmap];0.92[CHB][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014