SNP Report
Basic Infomation
| Name | rs2525522 dbSNP |
|---|---|
| Location | chr:14,69003966 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1023529 | 0.90[ASN][1000 genomes] |
| rs1476586 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1859302 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2040782 | 0.83[AMR][1000 genomes] |
| rs2079211 | 0.86[AMR][1000 genomes] |
| rs2107341 | 0.88[AMR][1000 genomes] |
| rs2158358 | 0.90[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs2247048 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2525521 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs2525523 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2525524 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2525525 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2525526 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2525527 | 0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2842325 | 0.83[AMR][1000 genomes] |
| rs2842329 | 0.86[AMR][1000 genomes];0.85[ASN][1000 genomes] |
| rs2842331 | 0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs2842338 | 0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs757370 | 0.86[AMR][1000 genomes] |
| rs916962 | 0.98[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs929285 | 0.82[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014