SNP Report
Basic Infomation
| Name | rs2107341 dbSNP |
|---|---|
| Location | chr:14,68986639 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1476586 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs1859302 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2078316 | 0.94[JPT][hapmap] |
| rs2158358 | 0.82[AMR][1000 genomes] |
| rs2247048 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2525521 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2525522 | 0.88[AMR][1000 genomes] |
| rs2525523 | 0.80[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2525524 | 0.83[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2525525 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2525526 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2525527 | 0.88[CEU][hapmap];0.88[AMR][1000 genomes] |
| rs2842331 | 0.88[CEU][hapmap];0.90[AMR][1000 genomes] |
| rs2842338 | 0.94[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs916962 | 0.88[CEU][hapmap];0.81[JPT][hapmap];0.90[AMR][1000 genomes] |
| rs9323513 | 0.81[JPT][hapmap] |
| rs9323514 | 0.81[JPT][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014