SNP Report
Basic Infomation
| Name | rs11158749 dbSNP |
|---|---|
| Location | chr:14,68997296 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10134446 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1023529 | 0.88[JPT][hapmap] |
| rs1023530 | 0.82[CHB][hapmap] |
| rs12882030 | 0.82[CHB][hapmap] |
| rs12887124 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1476586 | 0.88[JPT][hapmap] |
| rs1859302 | 0.88[JPT][hapmap] |
| rs2078316 | 0.81[CHB][hapmap];0.89[JPT][hapmap] |
| rs2158358 | 0.88[JPT][hapmap] |
| rs2189517 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2247048 | 0.89[JPT][hapmap] |
| rs2525521 | 0.89[JPT][hapmap] |
| rs2525523 | 0.88[JPT][hapmap] |
| rs2525524 | 0.89[JPT][hapmap] |
| rs2525525 | 0.88[JPT][hapmap] |
| rs2525526 | 0.89[JPT][hapmap] |
| rs2525527 | 0.81[JPT][hapmap] |
| rs2525530 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2679 | 0.90[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs2842329 | 0.81[JPT][hapmap] |
| rs2842331 | 0.87[JPT][hapmap] |
| rs7140266 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.86[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs916962 | 0.94[JPT][hapmap] |
| rs9323513 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs9323514 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.98[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014