SNP Report
Basic Infomation
| Name | rs2525530 dbSNP |
|---|---|
| Location | chr:14,69014452 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10134446 | 0.92[CEU][hapmap];0.98[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs1023529 | 0.93[CHB][hapmap] |
| rs11158749 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs12587232 | 0.80[TSI][hapmap];0.81[EUR][1000 genomes] |
| rs12887124 | 0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs17105828 | 0.81[LWK][hapmap] |
| rs2040782 | 0.86[ASN][1000 genomes] |
| rs2079211 | 0.85[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs2158358 | 0.80[ASN][1000 genomes] |
| rs2189517 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs2244814 | 0.81[CHB][hapmap];0.82[CHD][hapmap];0.92[JPT][hapmap];0.89[ASN][1000 genomes] |
| rs2679 | 0.85[JPT][hapmap];0.80[MEX][hapmap] |
| rs2842325 | 0.85[CHB][hapmap];0.92[JPT][hapmap];0.86[ASN][1000 genomes] |
| rs2842328 | 0.86[ASN][1000 genomes] |
| rs7140266 | 0.92[CEU][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs757370 | 0.83[CHB][hapmap];0.83[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs929285 | 0.85[CHB][hapmap];0.92[JPT][hapmap];0.91[ASN][1000 genomes] |
| rs9323513 | 0.92[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014