SNP Report
Basic Infomation
| Name | rs2679 dbSNP |
|---|---|
| Location | chr:14,69023999 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 17)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10134446 | 0.89[CHB][hapmap];0.84[MEX][hapmap];0.80[AMR][1000 genomes] |
| rs11158749 | 0.90[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs11158751 | 0.89[CEU][hapmap];0.92[GIH][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12587232 | 0.82[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs12887124 | 0.80[AMR][1000 genomes] |
| rs17105837 | 0.86[MKK][hapmap] |
| rs2078316 | 0.85[CHB][hapmap] |
| rs2079211 | 0.92[JPT][hapmap] |
| rs2189517 | 0.90[CHB][hapmap];0.84[MEX][hapmap];0.81[AMR][1000 genomes] |
| rs2244814 | 0.92[JPT][hapmap] |
| rs2525530 | 0.85[JPT][hapmap];0.80[MEX][hapmap] |
| rs2842325 | 0.92[JPT][hapmap] |
| rs7140266 | 0.90[CHB][hapmap];0.81[AMR][1000 genomes];0.80[ASN][1000 genomes] |
| rs757370 | 0.85[JPT][hapmap] |
| rs929285 | 0.92[JPT][hapmap] |
| rs9323513 | 0.90[CHB][hapmap];0.80[AMR][1000 genomes] |
| rs9323514 | 0.88[CEU][hapmap];0.88[CHB][hapmap];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes];0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFP36L1 | Distal transcriptional regulation |
| RAD51B | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| CCPG1 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014