SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 10)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs1023530	0.94[CEU][hapmap]
rs11158750	1.00[CEU][hapmap];1.00[LWK][hapmap];0.92[MKK][hapmap];0.97[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs12586230	0.90[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.80[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12588940	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12590644	0.89[CHB][hapmap];1.00[JPT][hapmap];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12882030	1.00[CEU][hapmap];0.87[YRI][hapmap];0.81[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs1290999	0.81[MKK][hapmap]
rs2679	0.86[MKK][hapmap]
rs2842333	0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs877506	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
ZFP36L1	Distal transcriptional regulation
RAD51B	Distal transcriptional regulation
RAD51B	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 2)

eQTL related gene	Source
MAP3K9	SCAN
FUT8	SCAN