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rVarBase
SNP Report
Basic Infomation
Name
rs2842333  
dbSNP
Location
chr:14,69008693
Allele
T/C
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs10133625
0.95[ASN][1000 genomes]
rs10135398
0.84[CEU][hapmap]
rs1023530
0.86[CEU][hapmap];0.90[JPT][hapmap];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11158750
0.90[CEU][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12586230
0.91[CEU][hapmap]
rs12882030
0.91[CEU][hapmap];0.95[JPT][hapmap];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs17105837
0.90[CEU][hapmap];0.88[EUR][1000 genomes]
rs6573842
0.82[CHB][hapmap]
rs877506
0.91[CEU][hapmap];0.88[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
RAD51B
Proximal transcriptional regulation
RAD51B
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)