SNP Report
Basic Infomation
| Name | rs2731071 dbSNP |
|---|---|
| Location | chr:12,48917007 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783256 | 1.00[CEU][hapmap];0.81[EUR][1000 genomes] |
| rs10875804 | 1.00[CEU][hapmap] |
| rs11168547 | 0.82[CEU][hapmap] |
| rs11168576 | 1.00[CEU][hapmap] |
| rs11168629 | 1.00[CEU][hapmap] |
| rs11168630 | 1.00[CEU][hapmap] |
| rs11168631 | 1.00[CEU][hapmap] |
| rs11168634 | 1.00[CEU][hapmap] |
| rs11168635 | 1.00[CEU][hapmap] |
| rs11168636 | 1.00[CEU][hapmap] |
| rs11168638 | 1.00[CEU][hapmap];0.84[TSI][hapmap] |
| rs11168639 | 1.00[CEU][hapmap];0.84[TSI][hapmap] |
| rs11168640 | 0.85[CEU][hapmap] |
| rs12230448 | 1.00[CEU][hapmap];0.84[TSI][hapmap] |
| rs12230471 | 1.00[CEU][hapmap] |
| rs17237094 | 1.00[CEU][hapmap] |
| rs17237198 | 1.00[CEU][hapmap];0.84[TSI][hapmap] |
| rs17834022 | 1.00[CEU][hapmap] |
| rs2468942 | 1.00[CEU][hapmap] |
| rs2705123 | 1.00[CEU][hapmap];0.84[EUR][1000 genomes] |
| rs2705126 | 1.00[CEU][hapmap];0.86[TSI][hapmap];0.85[EUR][1000 genomes] |
| rs2705133 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs2705158 | 0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2705161 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs2705162 | 0.96[EUR][1000 genomes] |
| rs2731069 | 0.85[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs2731073 | 1.00[CEU][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs2731101 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs57022528 | 0.83[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| OR8S1 | Proximal transcriptional regulation |
| ENSG00000198678 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014