SNP Report
Basic Infomation
| Name | rs11168547 dbSNP |
|---|---|
| Location | chr:12,48784781 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10783256 | 0.82[CEU][hapmap] |
| rs10875804 | 0.82[CEU][hapmap] |
| rs11168576 | 0.82[CEU][hapmap] |
| rs11168629 | 0.82[CEU][hapmap] |
| rs11168630 | 0.82[CEU][hapmap] |
| rs11168631 | 0.82[CEU][hapmap] |
| rs11168634 | 0.82[CEU][hapmap] |
| rs11168635 | 0.82[CEU][hapmap] |
| rs11168636 | 1.00[CEU][hapmap] |
| rs11168638 | 0.82[CEU][hapmap] |
| rs11168639 | 0.82[CEU][hapmap] |
| rs12230448 | 0.82[CEU][hapmap] |
| rs12230471 | 0.82[CEU][hapmap] |
| rs17237094 | 0.82[CEU][hapmap] |
| rs17237198 | 0.82[CEU][hapmap] |
| rs17834022 | 1.00[CEU][hapmap] |
| rs2468942 | 0.82[CEU][hapmap] |
| rs2705123 | 0.82[CEU][hapmap] |
| rs2705126 | 0.82[CEU][hapmap] |
| rs2705133 | 0.82[CEU][hapmap] |
| rs2705161 | 0.82[CEU][hapmap] |
| rs2731071 | 0.82[CEU][hapmap] |
| rs2731073 | 0.82[CEU][hapmap] |
| rs2731101 | 0.82[CEU][hapmap] |
| rs4592463 | 0.87[ASN][1000 genomes] |
| rs4760703 | 1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000258024 | Proximal transcriptional regulation |
| ENSG00000257792 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014