SNP Report
Basic Infomation
| Name | rs2708440 dbSNP |
|---|---|
| Location | chr:12,40623730 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs17489344 | 1.00[AMR][1000 genomes] |
| rs17490062 | 1.00[AMR][1000 genomes] |
| rs17490397 | 0.83[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17518532 | 1.00[AMR][1000 genomes] |
| rs17518910 | 1.00[AMR][1000 genomes] |
| rs17519034 | 0.83[YRI][hapmap];1.00[AMR][1000 genomes] |
| rs2252434 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2256286 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2256408 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2638273 | 0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2708439 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2708444 | 0.83[YRI][hapmap];0.84[AFR][1000 genomes] |
| rs2723262 | 0.84[AFR][1000 genomes] |
| rs2723267 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2723272 | 0.83[YRI][hapmap];0.87[AFR][1000 genomes] |
| rs2723273 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28370790 | 1.00[AMR][1000 genomes] |
| rs28370793 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| LRRK2 | Distal transcriptional regulation |
| LRRK2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014