SNP Report
Basic Infomation
| Name | rs2258946 dbSNP |
|---|---|
| Location | chr:10,93624672 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736066 | 1.00[CHB][hapmap];0.91[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1417257 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1538831 | 0.82[EUR][1000 genomes] |
| rs1538832 | 0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1630388 | 0.82[EUR][1000 genomes] |
| rs17347260 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17433251 | 0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1770469 | 0.82[EUR][1000 genomes] |
| rs1772186 | 0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1772187 | 0.82[EUR][1000 genomes] |
| rs1772188 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2421705 | 1.00[CHB][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2421706 | 1.00[CHB][hapmap];0.86[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61874749 | 0.81[ASN][1000 genomes] |
| rs6583792 | 1.00[CHB][hapmap];0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7083959 | 0.82[EUR][1000 genomes] |
| rs7089495 | 0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7093658 | 0.89[ASW][hapmap];0.84[MEX][hapmap];0.90[ASN][1000 genomes] |
| rs7910742 | 0.81[EUR][1000 genomes] |
| rs7912830 | 0.81[ASW][hapmap];1.00[CHB][hapmap];0.92[MEX][hapmap];0.88[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7919191 | 0.80[EUR][1000 genomes] |
| rs9420573 | 0.82[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TNKS2 | Proximal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 2)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014