SNP Report
Basic Infomation
| Name | rs1417257 dbSNP |
|---|---|
| Location | chr:10,93649880 |
| Allele | G/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10736066 | 0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1538832 | 0.81[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17347260 | 1.00[ASN][1000 genomes] |
| rs17433251 | 1.00[ASN][1000 genomes] |
| rs1772186 | 1.00[ASN][1000 genomes] |
| rs1772188 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2258946 | 0.91[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2421705 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2421706 | 0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs61874749 | 0.81[ASN][1000 genomes] |
| rs6583792 | 0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7089495 | 0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7093658 | 0.90[ASN][1000 genomes] |
| rs7912830 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| FGFBP3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014