SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 14)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10160516	0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12417294	0.95[EUR][1000 genomes]
rs12575056	0.85[CEU][hapmap]
rs12575518	1.00[CEU][hapmap];0.90[CHB][hapmap];0.80[CHD][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1801621	1.00[CEU][hapmap]
rs59432293	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7112078	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs7112821	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[EUR][1000 genomes]
rs7115285	1.00[CEU][hapmap];1.00[CHB][hapmap];0.83[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs7115654	1.00[CEU][hapmap];1.00[CHB][hapmap];0.84[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.90[EUR][1000 genomes]
rs7115826	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[EUR][1000 genomes]
rs7937027	0.95[EUR][1000 genomes]
rs7937233	0.95[EUR][1000 genomes]
rs7937242	0.90[EUR][1000 genomes]

rSNP related genes

Symbol	Regulation type
FTH1	Proximal transcriptional regulation
ENSG00000269089	Proximal transcriptional regulation
MALAT1	Distal transcriptional regulation
FADS1	Distal transcriptional regulation
ENSG00000256914	Distal transcriptional regulation
MIR1908	Distal transcriptional regulation
FADS2	Distal transcriptional regulation
RAB3IL1	Distal transcriptional regulation
INCENP	Distal transcriptional regulation
MYL6	Distal transcriptional regulation
ENSG00000257809	Distal transcriptional regulation
KRT8	Distal transcriptional regulation
FADS3	Distal transcriptional regulation
ENSG00000244176	Distal transcriptional regulation
WDR74	Distal transcriptional regulation
ENSG00000269089	RNA binding protein mediated regulation

rSNP related regulatory elements

eQTL evidence (count: 1)