SNP Report
Basic Infomation
| Name | rs1801621 dbSNP |
|---|---|
| Location | chr:11,61731727 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12575056 | 0.85[CEU][hapmap] |
| rs12575518 | 1.00[CEU][hapmap] |
| rs2073588 | 1.00[CEU][hapmap] |
| rs61897792 | 1.00[AFR][1000 genomes] |
| rs7112078 | 1.00[CEU][hapmap] |
| rs7112821 | 1.00[CEU][hapmap] |
| rs7115285 | 1.00[CEU][hapmap] |
| rs7115654 | 1.00[CEU][hapmap] |
| rs7115826 | 1.00[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BEST1 | Proximal transcriptional regulation |
| ENSG00000269089 | Proximal transcriptional regulation |
| C1orf138 | Distal transcriptional regulation |
| ENSG00000238279 | Distal transcriptional regulation |
| LOH12CR2 | Distal transcriptional regulation |
| LOH12CR1 | Distal transcriptional regulation |
| CARHSP1 | Distal transcriptional regulation |
| ENSG00000261481 | Distal transcriptional regulation |
| EIF4A1 | Distal transcriptional regulation |
| ENSG00000264772 | Distal transcriptional regulation |
| PTBP1 | Distal transcriptional regulation |
| ZFP36 | Distal transcriptional regulation |
| CXCR4 | Distal transcriptional regulation |
| ZNFX1 | Distal transcriptional regulation |
| ZFAS1 | Distal transcriptional regulation |
| SCARB2 | Distal transcriptional regulation |
| FAM47E | Distal transcriptional regulation |
| PRR3 | Distal transcriptional regulation |
| GNL1 | Distal transcriptional regulation |
| OTUD5 | Distal transcriptional regulation |
| HPS5 | Distal transcriptional regulation |
| GTF2H1 | Distal transcriptional regulation |
| TRIM44 | Distal transcriptional regulation |
| FADS2 | Distal transcriptional regulation |
| FADS1 | Distal transcriptional regulation |
| FADS3 | Distal transcriptional regulation |
| RAB3IL1 | Distal transcriptional regulation |
| ENSG00000255553 | Distal transcriptional regulation |
| ENSG00000244176 | Distal transcriptional regulation |
| ENSG00000266411 | Distal transcriptional regulation |
| VMP1 | Distal transcriptional regulation |
| POLDIP3 | Distal transcriptional regulation |
| ENSG00000270022 | Distal transcriptional regulation |
| ADAM17 | Distal transcriptional regulation |
| MIR611 | Distal transcriptional regulation |
| TMEM258 | Distal transcriptional regulation |
| FEN1 | Distal transcriptional regulation |
| TAF1D | Distal transcriptional regulation |
| C11orf54 | Distal transcriptional regulation |
| BEST1 | RNA binding protein mediated regulation |
| FTH1 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014