SNP Report
Basic Infomation
| Name | rs207270 dbSNP |
|---|---|
| Location | chr:6,90828882 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 24)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs112841 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12196749 | 0.85[EUR][1000 genomes] |
| rs207254 | 0.81[EUR][1000 genomes] |
| rs207255 | 0.81[EUR][1000 genomes] |
| rs207256 | 0.81[EUR][1000 genomes] |
| rs207258 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes] |
| rs207259 | 0.90[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs207261 | 0.82[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs207262 | 0.90[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs207263 | 0.83[EUR][1000 genomes] |
| rs207264 | 0.94[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[TSI][hapmap];0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs207265 | 0.92[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs207267 | 0.83[EUR][1000 genomes] |
| rs207268 | 0.83[ASW][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs207269 | 0.83[ASW][hapmap];0.90[JPT][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes] |
| rs207271 | 0.83[EUR][1000 genomes] |
| rs207272 | 0.90[JPT][hapmap];0.82[EUR][1000 genomes] |
| rs207273 | 0.90[JPT][hapmap];0.83[EUR][1000 genomes] |
| rs207274 | 0.81[EUR][1000 genomes] |
| rs207275 | 0.81[EUR][1000 genomes] |
| rs207276 | 0.81[EUR][1000 genomes] |
| rs207277 | 0.82[EUR][1000 genomes] |
| rs2325258 | 0.85[EUR][1000 genomes] |
| rs2501721 | 0.83[TSI][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000218730 | Proximal transcriptional regulation |
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014