SNP Report
Basic Infomation
| Name | rs12196749 dbSNP |
|---|---|
| Location | chr:6,90819815 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 18)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10485038 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs10944477 | 0.93[ASN][1000 genomes] |
| rs112841 | 0.85[EUR][1000 genomes] |
| rs11753332 | 0.92[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs11754356 | 0.86[EUR][1000 genomes] |
| rs12194007 | 0.90[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs12197750 | 0.86[EUR][1000 genomes] |
| rs12202119 | 0.92[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs207264 | 0.85[EUR][1000 genomes] |
| rs207265 | 0.85[EUR][1000 genomes] |
| rs207270 | 0.85[EUR][1000 genomes] |
| rs2325258 | 0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes] |
| rs4706360 | 1.00[JPT][hapmap] |
| rs57858238 | 0.93[ASN][1000 genomes] |
| rs62408204 | 0.86[EUR][1000 genomes] |
| rs6454802 | 0.91[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs72925947 | 0.86[EUR][1000 genomes] |
| rs7753008 | 0.87[CEU][hapmap];0.83[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014