SNP Report
Basic Infomation
| Name | rs12202119 dbSNP |
|---|---|
| Location | chr:6,90815190 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 15)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11753332 | 1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11754356 | 0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12194007 | 1.00[CEU][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12196749 | 0.92[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs12197750 | 0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs16882462 | 1.00[ASN][1000 genomes] |
| rs17773432 | 1.00[ASN][1000 genomes] |
| rs2325258 | 0.86[EUR][1000 genomes] |
| rs62408204 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6454802 | 1.00[CEU][hapmap];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72925947 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73505258 | 1.00[ASN][1000 genomes] |
| rs7742553 | 1.00[ASN][1000 genomes] |
| rs7742838 | 1.00[ASN][1000 genomes] |
| rs7753008 | 0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014