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rVarBase
SNP Report
Basic Infomation
Name
rs7742553  
dbSNP
Location
chr:6,90833920
Allele
C/T
LD-proxy of rSNPs(r
2
>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11753332
1.00[ASN][1000 genomes]
rs11754356
1.00[ASN][1000 genomes]
rs11962625
0.92[EUR][1000 genomes]
rs11968498
1.00[CEU][hapmap];0.96[EUR][1000 genomes]
rs12194007
1.00[ASN][1000 genomes]
rs12202119
1.00[ASN][1000 genomes]
rs16882462
1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17773432
1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62408204
1.00[ASN][1000 genomes]
rs6454802
1.00[ASN][1000 genomes]
rs73505258
0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7450645
0.92[EUR][1000 genomes]
rs7742838
1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7753008
1.00[ASN][1000 genomes]
rSNP related genes
Symbol
Regulation type
BACH2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)