SNP Report
Basic Infomation
| Name | rs16882462 dbSNP |
|---|---|
| Location | chr:6,90862437 |
| Allele | A/G |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11753332 | 1.00[ASN][1000 genomes] |
| rs11754356 | 1.00[ASN][1000 genomes] |
| rs11962625 | 0.84[EUR][1000 genomes] |
| rs11968498 | 1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes] |
| rs12194007 | 1.00[ASN][1000 genomes] |
| rs12202119 | 1.00[ASN][1000 genomes] |
| rs12205059 | 1.00[CHD][hapmap];1.00[MKK][hapmap] |
| rs13199026 | 1.00[CHD][hapmap] |
| rs166953 | 1.00[CHD][hapmap] |
| rs17767336 | 1.00[CHD][hapmap] |
| rs17773432 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs285642 | 1.00[CHD][hapmap] |
| rs285644 | 1.00[CHD][hapmap] |
| rs62408204 | 1.00[ASN][1000 genomes] |
| rs6454802 | 1.00[ASN][1000 genomes] |
| rs73505258 | 0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7450645 | 0.84[EUR][1000 genomes] |
| rs7742553 | 1.00[CEU][hapmap];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7742838 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7753008 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014