SNP Report
Basic Infomation
| Name | rs13199026 dbSNP |
|---|---|
| Location | chr:6,90777594 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs12205059 | 1.00[CHD][hapmap] |
| rs13197987 | 1.00[ASN][1000 genomes] |
| rs13198989 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs13202132 | 1.00[ASN][1000 genomes] |
| rs13206481 | 1.00[ASN][1000 genomes] |
| rs13210253 | 1.00[ASN][1000 genomes] |
| rs13220655 | 1.00[ASN][1000 genomes] |
| rs16882462 | 1.00[CHD][hapmap] |
| rs17767336 | 1.00[CHD][hapmap];1.00[YRI][hapmap] |
| rs34775650 | 1.00[ASN][1000 genomes] |
| rs35421650 | 1.00[ASN][1000 genomes] |
| rs35837989 | 1.00[ASN][1000 genomes] |
| rs36014049 | 0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs56331762 | 1.00[ASN][1000 genomes] |
| rs66535420 | 1.00[ASN][1000 genomes] |
| rs66607651 | 1.00[ASN][1000 genomes] |
| rs6929363 | 1.00[ASN][1000 genomes] |
| rs6929847 | 1.00[ASN][1000 genomes] |
| rs71556355 | 0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs72923980 | 1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| BACH2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014