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rVarBase
SNP Report
Basic Infomation
Name
rs207258
dbSNP
Location
chr:6,90814496
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs112841
1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs207259
0.92[JPT][hapmap]
rs207261
0.84[JPT][hapmap]
rs207262
0.92[JPT][hapmap]
rs207264
1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs207265
0.93[ASN][1000 genomes]
rs207268
0.90[JPT][hapmap]
rs207269
0.90[JPT][hapmap]
rs207270
1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs207272
0.92[JPT][hapmap]
rs207273
0.91[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
BACH2
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)