SNP Report

Basic Infomation

Name	rs2501721 dbSNP
Location	chr:6,90845036
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 19)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs207254	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs207255	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs207256	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs207259	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs207261	0.96[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207262	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs207263	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs207264	0.83[TSI][hapmap]
rs207267	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207268	0.92[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.89[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207269	0.96[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.83[JPT][hapmap];0.90[MEX][hapmap];0.98[TSI][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207270	0.83[TSI][hapmap]
rs207271	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207272	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207273	0.96[CEU][hapmap];1.00[CHB][hapmap];0.83[JPT][hapmap];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207274	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs207275	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207276	0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs207277	0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
BACH2	RNA binding protein mediated regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)