SNP Report

Basic Infomation

Name	rs2009590 dbSNP
Location	chr:14,68187700
Allele	T/C

LD-proxy of rSNPs(r²>0.8) (count: 31)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10483802	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs11622772	0.83[YRI][hapmap]
rs12100925	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12431676	0.91[ASW][hapmap];1.00[CEU][hapmap];0.92[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.85[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12432546	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12434923	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.84[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12435352	1.00[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];0.83[TSI][hapmap];0.94[YRI][hapmap];0.99[AFR][1000 genomes];0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12435531	1.00[CHB][hapmap];0.92[JPT][hapmap];0.88[YRI][hapmap];0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12435927	0.92[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs12436474	0.83[ASN][1000 genomes]
rs12437263	0.87[AFR][1000 genomes];0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12587111	0.81[ASN][1000 genomes]
rs12590038	0.96[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12590620	0.80[ASN][1000 genomes]
rs12881478	0.83[YRI][hapmap]
rs15493	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17249444	0.82[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes]
rs17249563	0.83[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs1804799	1.00[ASW][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[GIH][hapmap];0.92[JPT][hapmap];1.00[MEX][hapmap];0.94[YRI][hapmap];0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs3759768	1.00[CHB][hapmap];0.91[JPT][hapmap];0.94[YRI][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs56246064	0.81[ASN][1000 genomes]
rs56981676	0.80[ASN][1000 genomes]
rs58668895	0.81[ASN][1000 genomes]
rs59421018	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs60851053	0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs718213	0.84[JPT][hapmap];0.97[EUR][1000 genomes]
rs742868	0.83[YRI][hapmap]
rs8010798	1.00[CHB][hapmap];0.92[JPT][hapmap];0.94[YRI][hapmap];0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs8013234	0.91[GIH][hapmap];0.84[JPT][hapmap];0.93[MEX][hapmap];0.83[TSI][hapmap];0.82[AMR][1000 genomes]
rs910315	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9449	0.83[YRI][hapmap]

rSNP related genes

Symbol	Regulation type
RDH12	Proximal transcriptional regulation
RDH12	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 1)