SNP Report
Basic Infomation
| Name | rs60851053 dbSNP |
|---|---|
| Location | chr:14,68134432 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10483802 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12100925 | 0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12431676 | 0.92[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs12432546 | 0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12434923 | 0.81[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12435352 | 0.94[AFR][1000 genomes];0.85[AMR][1000 genomes];0.94[ASN][1000 genomes] |
| rs12435531 | 0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12435927 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs12436474 | 0.84[EUR][1000 genomes];0.80[ASN][1000 genomes] |
| rs12437263 | 0.83[AFR][1000 genomes];0.80[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs12590038 | 0.80[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs15493 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs17249563 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes] |
| rs1804799 | 0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs2009590 | 0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
| rs3759768 | 0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes] |
| rs59421018 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8010798 | 0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs8013234 | 0.80[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs910315 | 0.81[AMR][1000 genomes];0.93[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| PLEKHH1 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014