SNP Report
Basic Infomation
| Name | rs17249444 dbSNP |
|---|---|
| Location | chr:14,68101454 |
| Allele | G/C |
LD-proxy of rSNPs(r2>0.8) (count: 26)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10136206 | 0.93[JPT][hapmap];0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs10483802 | 0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12100925 | 0.81[ASN][1000 genomes] |
| rs12432546 | 0.81[ASN][1000 genomes] |
| rs12434923 | 0.82[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs12435352 | 0.82[CHB][hapmap];0.88[CHD][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs12435531 | 0.83[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12435927 | 0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs12436474 | 0.98[ASN][1000 genomes] |
| rs12437263 | 0.81[ASN][1000 genomes] |
| rs12587111 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12590038 | 0.81[ASN][1000 genomes] |
| rs12590620 | 0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs15493 | 0.82[CHB][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs17249563 | 0.81[ASN][1000 genomes] |
| rs1804799 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.85[JPT][hapmap];0.81[ASN][1000 genomes] |
| rs2009590 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes] |
| rs3759768 | 0.92[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs56246064 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs56981676 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes] |
| rs58588003 | 0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58668895 | 0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs6573788 | 0.89[MEX][hapmap];0.81[MKK][hapmap] |
| rs8010798 | 0.82[CHB][hapmap];0.85[JPT][hapmap];0.83[ASN][1000 genomes] |
| rs8012815 | 0.88[MEX][hapmap];0.82[MKK][hapmap] |
| rs910315 | 0.82[CHB][hapmap];0.86[CHD][hapmap];0.81[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARG2 | Distal transcriptional regulation |
| ARG2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 3)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014