SNP Report
Basic Infomation
| Name | rs1782645 dbSNP |
|---|---|
| Location | chr:10,81048611 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 14)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1108616 | 0.80[CHB][hapmap];0.90[JPT][hapmap];0.84[ASN][1000 genomes] |
| rs1108617 | 0.84[ASN][1000 genomes] |
| rs1108618 | 0.91[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes] |
| rs1250541 | 0.85[JPT][hapmap] |
| rs1250545 | 0.86[JPT][hapmap] |
| rs1250549 | 0.86[JPT][hapmap] |
| rs1250552 | 0.88[CHD][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap] |
| rs1250559 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1250560 | 0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes] |
| rs1250567 | 0.85[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1250568 | 0.90[EUR][1000 genomes] |
| rs1250569 | 0.86[EUR][1000 genomes] |
| rs2802372 | 0.95[GIH][hapmap];0.80[MEX][hapmap];0.90[TSI][hapmap];0.90[EUR][1000 genomes] |
| rs942793 | 0.86[AMR][1000 genomes];0.96[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZMIZ1 | Distal transcriptional regulation |
| PPIF | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014