SNP Report

Basic Infomation

LD-proxy of rSNPs(r²>0.8) (count: 9)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs12355688	0.97[LWK][hapmap];0.82[MKK][hapmap]
rs1250545	0.80[JPT][hapmap]
rs1250549	0.90[JPT][hapmap]
rs1250552	0.83[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap]
rs1250560	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1250564	0.81[CEU][hapmap];0.87[GIH][hapmap];0.84[LWK][hapmap];0.85[MKK][hapmap]
rs1782645	0.90[CHB][hapmap];0.95[CHD][hapmap];0.86[JPT][hapmap];0.82[ASN][1000 genomes]
rs4980060	0.83[LWK][hapmap]
rs942793	0.82[AMR][1000 genomes];0.86[ASN][1000 genomes]

rSNP related genes

Symbol	Regulation type
PPIF	Distal transcriptional regulation
ZMIZ1	Distal transcriptional regulation

rSNP related regulatory elements

eQTL evidence (count: 0)