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rVarBase
SNP Report
Basic Infomation
Name
rs1250552  
dbSNP
Location
chr:10,81058027
Allele
A/G
LD-proxy of rSNPs(r
2
>0.8) (count: 6)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1108616
0.80[JPT][hapmap]
rs1250549
0.85[CEU][hapmap];1.00[CHB][hapmap];0.85[CHD][hapmap];0.95[JPT][hapmap];0.83[MEX][hapmap];0.88[ASN][1000 genomes]
rs1250559
0.83[CHD][hapmap];0.95[JPT][hapmap];0.80[MEX][hapmap]
rs1250560
0.83[CHD][hapmap];0.95[JPT][hapmap];0.84[MEX][hapmap]
rs1250567
0.81[AMR][1000 genomes]
rs1782645
0.88[CHD][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap]
rSNP related genes
Symbol
Regulation type
ZMIZ1
Distal transcriptional regulation
PPIF
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
eQTL related gene
Source
VSIG2
SCAN