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rVarBase
SNP Report
Basic Infomation
Name
rs1250545  
dbSNP
Location
chr:10,81032817
Allele
G/C
LD-proxy of rSNPs(r
2
>0.8) (count: 5)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs1108616
0.93[CEU][hapmap];0.87[JPT][hapmap];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1250541
1.00[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1250559
0.80[JPT][hapmap]
rs1250560
0.80[JPT][hapmap]
rs1782645
0.86[JPT][hapmap]
rSNP related genes
Symbol
Regulation type
ZMIZ1
Proximal transcriptional regulation
PPIF
Distal transcriptional regulation
ZMIZ1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)