SNP Report
Name | rs17461231   dbSNP |
---|---|
Location | chr:1,113994893 |
Allele | T/G |
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
rs_ID | r2[population][source] |
---|---|
rs11102629 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
rs11102646 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs11578447 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.89[EUR][1000 genomes] |
rs11579386 | 0.87[CEU][hapmap] |
rs12117465 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes] |
rs12117919 | 0.93[EUR][1000 genomes] |
rs12119281 | 0.90[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs12125741 | 1.00[YRI][hapmap];0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
rs12127683 | 0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12130729 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.94[EUR][1000 genomes] |
rs12130763 | 1.00[EUR][1000 genomes] |
rs12131115 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs12144505 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes] |
rs12145834 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17031640 | 0.87[CEU][hapmap] |
rs17031645 | 0.87[CEU][hapmap] |
rs17031648 | 0.87[CEU][hapmap] |
rs17448063 | 1.00[CEU][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes] |
rs17461007 | 1.00[CEU][hapmap];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs17507884 | 1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.96[EUR][1000 genomes] |
rs1936931 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs2359415 | 0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6537788 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.82[YRI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes] |
rs6671518 | 0.87[CEU][hapmap] |
rs6696459 | 0.87[CEU][hapmap] |
rs7514186 | 0.87[CEU][hapmap] |
rs7528311 | 0.87[CEU][hapmap] |
rs7533429 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
rs7555259 | 0.87[CEU][hapmap] |
Symbol | Regulation type |
---|---|
MAGI3 | Distal transcriptional regulation |
MAGI3 | RNA binding protein mediated regulation |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014