SNP Report
Basic Infomation
| Name | rs11102629 dbSNP |
|---|---|
| Location | chr:1,113969417 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 29)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11102646 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.89[EUR][1000 genomes] |
| rs11578447 | 1.00[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs11579386 | 0.87[CEU][hapmap] |
| rs12117465 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs12117919 | 0.93[EUR][1000 genomes] |
| rs12119281 | 1.00[EUR][1000 genomes] |
| rs12125741 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12127683 | 1.00[EUR][1000 genomes] |
| rs12130729 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12130763 | 0.92[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12131115 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs12144505 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs12145834 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs17031640 | 0.87[CEU][hapmap] |
| rs17031645 | 0.87[CEU][hapmap] |
| rs17031648 | 0.87[CEU][hapmap] |
| rs17448063 | 1.00[CEU][hapmap];0.96[EUR][1000 genomes] |
| rs17461007 | 1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[EUR][1000 genomes] |
| rs17461231 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes] |
| rs17507884 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs1936931 | 1.00[EUR][1000 genomes] |
| rs2359415 | 1.00[EUR][1000 genomes] |
| rs6537788 | 1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes] |
| rs6671518 | 0.87[CEU][hapmap] |
| rs6696459 | 0.87[CEU][hapmap] |
| rs7514186 | 0.87[CEU][hapmap] |
| rs7528311 | 0.87[CEU][hapmap] |
| rs7533429 | 1.00[CEU][hapmap];1.00[EUR][1000 genomes] |
| rs7555259 | 0.87[CEU][hapmap] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | Distal transcriptional regulation |
| MAGI3 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014