SNP Report
Basic Infomation
| Name | rs12117919 dbSNP |
|---|---|
| Location | chr:1,113929511 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 20)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11102629 | 0.93[EUR][1000 genomes] |
| rs11102646 | 0.83[EUR][1000 genomes] |
| rs11578447 | 0.83[EUR][1000 genomes] |
| rs12117465 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12119281 | 0.93[EUR][1000 genomes] |
| rs12125741 | 0.93[EUR][1000 genomes] |
| rs12127683 | 0.93[EUR][1000 genomes] |
| rs12130729 | 0.88[EUR][1000 genomes] |
| rs12130763 | 0.93[EUR][1000 genomes] |
| rs12131115 | 0.93[EUR][1000 genomes] |
| rs12144505 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs12145834 | 0.93[EUR][1000 genomes] |
| rs17448063 | 0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs17461007 | 0.93[EUR][1000 genomes] |
| rs17461231 | 0.93[EUR][1000 genomes] |
| rs17507884 | 0.89[EUR][1000 genomes] |
| rs1936931 | 0.93[EUR][1000 genomes] |
| rs2359415 | 0.93[EUR][1000 genomes] |
| rs6537788 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs7533429 | 0.93[EUR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| MAGI3 | Proximal transcriptional regulation |
| MAGI3 | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014