SNP Report
Basic Infomation
| Name | rs17156025 dbSNP |
|---|---|
| Location | chr:11,61186821 |
| Allele | A/C |
LD-proxy of rSNPs(r2>0.8) (count: 22)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs1037448 | 1.00[CHD][hapmap] |
| rs11230648 | 1.00[CHD][hapmap] |
| rs11230665 | 1.00[CHD][hapmap] |
| rs11230690 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11230738 | 1.00[CHD][hapmap] |
| rs11821768 | 1.00[MEX][hapmap] |
| rs11824028 | 1.00[ASN][1000 genomes] |
| rs12281296 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12284002 | 1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12285794 | 0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12791961 | 1.00[CHD][hapmap] |
| rs17156016 | 0.82[ASW][hapmap];0.91[EUR][1000 genomes] |
| rs1807359 | 0.83[AFR][1000 genomes];0.93[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs198738 | 1.00[MEX][hapmap] |
| rs198761 | 1.00[MEX][hapmap] |
| rs2008212 | 1.00[MEX][hapmap] |
| rs28720299 | 1.00[CHD][hapmap] |
| rs59271124 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6632 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];0.80[YRI][hapmap];0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7110530 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7929235 | 1.00[MEX][hapmap] |
| rs896830 | 1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TMEM216 | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| CPSF7 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| IL12A | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014