SNP Report
Basic Infomation
| Name | rs12281296 dbSNP |
|---|---|
| Location | chr:11,61196913 |
| Allele | G/A |
LD-proxy of rSNPs(r2>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11230690 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11824028 | 1.00[ASN][1000 genomes] |
| rs12284002 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12285794 | 0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs17156025 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1807359 | 0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs59271124 | 0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6632 | 0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs7110530 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs896830 | 0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| CPSF7 | Proximal transcriptional regulation |
| SDHAF2 | Proximal transcriptional regulation |
| ENSG00000256591 | Proximal transcriptional regulation |
| RABIF | Distal transcriptional regulation |
| TFAP2A | Distal transcriptional regulation |
| MALAT1 | Distal transcriptional regulation |
| VPS37C | Distal transcriptional regulation |
| DDB1 | Distal transcriptional regulation |
| CYBASC3 | Distal transcriptional regulation |
| TMEM138 | Distal transcriptional regulation |
| VWCE | Distal transcriptional regulation |
| TMEM216 | Distal transcriptional regulation |
| LRRC10B | Distal transcriptional regulation |
| DAK | Distal transcriptional regulation |
| CPSF7 | Distal transcriptional regulation |
| PPP1R32 | Distal transcriptional regulation |
| C11orf48 | Distal transcriptional regulation |
| C11orf83 | Distal transcriptional regulation |
| ENSG00000255931 | Distal transcriptional regulation |
| SYT7 | Distal transcriptional regulation |
| CPSF7 | RNA binding protein mediated regulation |
| ENSG00000256591 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014