SNP Report

Basic Infomation

Name	rs17104480 dbSNP
Location	chr:14,68076548
Allele	A/G

LD-proxy of rSNPs(r²>0.8) (count: 43)

The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r² >=0.8.

rs_ID	r²[population][source]
rs10131481	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131493	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10131731	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10131878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10131884	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10131990	1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10133414	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134090	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10134923	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10135791	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10135802	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10136402	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10136482	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10137882	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10139933	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10140733	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10141534	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10144907	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10145465	0.88[AFR][1000 genomes]
rs10146550	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10146702	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10148991	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs10150006	0.92[AFR][1000 genomes]
rs10150340	0.92[AFR][1000 genomes]
rs17104482	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17104486	0.91[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104488	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104495	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104501	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17104512	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28368810	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28449642	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs28457193	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28547499	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28549243	1.00[AMR][1000 genomes]
rs28575699	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs3742876	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs3759760	1.00[ASN][1000 genomes]
rs3759761	1.00[ASN][1000 genomes]
rs3759764	0.85[JPT][hapmap]
rs4899215	0.85[YRI][hapmap];0.82[AFR][1000 genomes]
rs7157923	0.85[JPT][hapmap]
rs7359109	0.85[JPT][hapmap]

rSNP related genes

Symbol	Regulation type
ENSG00000259502	Proximal transcriptional regulation
ENSG00000259648	Distal transcriptional regulation
VTI1B	Distal transcriptional regulation

rSNP related regulatory elements

Proximal transcriptional regulation

Distal transcriptional regulation

Post-transcriptional regulation:within mature miRNA

Post-transcriptional regulation: associated with RNA binding protein

eQTL evidence (count: 0)