SNP Report
Basic Infomation
| Name | rs3742876 dbSNP |
|---|---|
| Location | chr:14,68087731 |
| Allele | A/T |
LD-proxy of rSNPs(r2>0.8) (count: 21)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10131493 | 0.98[ASN][1000 genomes] |
| rs10131878 | 0.98[ASN][1000 genomes] |
| rs10131884 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10131990 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10134923 | 0.98[ASN][1000 genomes] |
| rs10136402 | 0.98[ASN][1000 genomes] |
| rs10137882 | 0.98[ASN][1000 genomes] |
| rs10139933 | 0.98[ASN][1000 genomes] |
| rs10140733 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10146550 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs10148991 | 0.98[ASN][1000 genomes] |
| rs11844904 | 0.82[CHB][hapmap] |
| rs17104480 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs17104482 | 1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes] |
| rs28449642 | 0.98[ASN][1000 genomes] |
| rs28575699 | 0.98[ASN][1000 genomes] |
| rs3759760 | 0.98[ASN][1000 genomes] |
| rs3759761 | 0.98[ASN][1000 genomes] |
| rs3759764 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes] |
| rs7157923 | 0.86[JPT][hapmap] |
| rs7359109 | 0.82[CHB][hapmap];0.86[JPT][hapmap];0.80[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ENSG00000201529 | Proximal transcriptional regulation |
| PIGH | Distal transcriptional regulation |
| ENSG00000259648 | Distal transcriptional regulation |
| ENSG00000201529 | Distal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
| COX7A2P1 | Distal transcriptional regulation |
| ARG2 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014