SNP Report
Basic Infomation
| Name | rs10144907 dbSNP |
|---|---|
| Location | chr:14,68085740 |
| Allele | C/T |
LD-proxy of rSNPs(r2>0.8) (count: 40)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10131481 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10131493 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10131731 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10131878 | 0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10131884 | 1.00[ASW][hapmap];0.92[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10131990 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10133414 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10134090 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10134923 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10135791 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10135802 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10136402 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10136482 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10137882 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10139933 | 1.00[AMR][1000 genomes] |
| rs10140733 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.93[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10141534 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10145465 | 0.96[AFR][1000 genomes] |
| rs10146550 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10146702 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10148991 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10150006 | 1.00[AFR][1000 genomes] |
| rs10150340 | 1.00[AFR][1000 genomes] |
| rs11846441 | 0.86[ASW][hapmap] |
| rs17104480 | 1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104482 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104486 | 0.91[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104488 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104495 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104501 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs17104512 | 1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2320030 | 0.86[ASW][hapmap] |
| rs28368810 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28449642 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28457193 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28547499 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs28549243 | 1.00[AMR][1000 genomes] |
| rs28575699 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4899215 | 0.86[YRI][hapmap];0.90[AFR][1000 genomes] |
| rs8017597 | 0.86[AFR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ARG2 | Proximal transcriptional regulation |
| ENSG00000201529 | Proximal transcriptional regulation |
| ENSG00000259648 | Distal transcriptional regulation |
| RDH11 | Distal transcriptional regulation |
| VTI1B | Distal transcriptional regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014