SNP Report
Basic Infomation
| Name | rs11846441 dbSNP |
|---|---|
| Location | chr:14,68195402 |
| Allele | C/G |
LD-proxy of rSNPs(r2>0.8) (count: 16)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10131884 | 0.86[ASW][hapmap] |
| rs10131990 | 0.91[YRI][hapmap] |
| rs10134090 | 0.86[ASW][hapmap] |
| rs10139933 | 0.91[YRI][hapmap] |
| rs10140733 | 0.86[ASW][hapmap] |
| rs10144907 | 0.86[ASW][hapmap] |
| rs1018450 | 1.00[AMR][1000 genomes] |
| rs1474796 | 0.86[ASW][hapmap];0.86[LWK][hapmap] |
| rs17104512 | 0.86[ASW][hapmap] |
| rs2320028 | 0.86[ASW][hapmap];0.86[LWK][hapmap] |
| rs2320030 | 1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4899215 | 1.00[AMR][1000 genomes] |
| rs4899223 | 0.86[ASW][hapmap] |
| rs7159735 | 1.00[YRI][hapmap] |
| rs8017085 | 0.86[ASW][hapmap];0.87[LWK][hapmap] |
| rs8017597 | 1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| RDH12 | Distal transcriptional regulation |
| ZFYVE26 | Distal transcriptional regulation |
| RDH12 | RNA binding protein mediated regulation |
| ZFYVE26 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 1)
| eQTL related gene | Source |
|---|---|
| ADAMTS4 | SCAN |
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014