SNP Report
Basic Infomation
| Name | rs1474796 dbSNP |
|---|---|
| Location | chr:14,68238687 |
| Allele | T/C |
LD-proxy of rSNPs(r2>0.8) (count: 25)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs10129402 | 1.00[AMR][1000 genomes] |
| rs10148493 | 0.84[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs10148929 | 1.00[AMR][1000 genomes] |
| rs10150303 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11625247 | 0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11846441 | 0.86[ASW][hapmap];0.86[LWK][hapmap] |
| rs12435419 | 1.00[AMR][1000 genomes] |
| rs12882546 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1535088 | 0.84[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs1955471 | 0.84[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2092691 | 0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2320028 | 1.00[ASW][hapmap];0.86[LWK][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs2320030 | 0.86[ASW][hapmap];0.84[LWK][hapmap];0.80[MKK][hapmap] |
| rs4899223 | 1.00[ASW][hapmap];0.93[LWK][hapmap];1.00[MKK][hapmap];0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs4902505 | 0.87[AFR][1000 genomes] |
| rs4902513 | 0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs6573798 | 1.00[AMR][1000 genomes] |
| rs7143260 | 0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7147365 | 0.93[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7147404 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7157923 | 0.88[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7159735 | 1.00[YRI][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8006137 | 1.00[AMR][1000 genomes] |
| rs8011138 | 0.91[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs8017085 | 1.00[ASW][hapmap];0.87[LWK][hapmap];0.84[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| ZFYVE26 | Proximal transcriptional regulation |
| ZFYVE26 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014