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rVarBase
SNP Report
Basic Infomation
Name
rs17093560  
dbSNP
Location
chr:20,30325713
Allele
G/A
LD-proxy of rSNPs(r
2
>0.8) (count: 9)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11698120
1.00[AFR][1000 genomes]
rs11698833
1.00[AFR][1000 genomes]
rs4911195
1.00[AFR][1000 genomes]
rs4911528
1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs4911535
1.00[AFR][1000 genomes]
rs4911539
1.00[AFR][1000 genomes]
rs4911540
1.00[AFR][1000 genomes]
rs6141618
1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs6142553
0.88[EUR][1000 genomes]
rSNP related genes
Symbol
Regulation type
TPX2
Proximal transcriptional regulation
HM13
Distal transcriptional regulation
HM13-AS1
Distal transcriptional regulation
ENSG00000268457
Distal transcriptional regulation
BCL2L1
Distal transcriptional regulation
TPX2
Distal transcriptional regulation
ID1
Distal transcriptional regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)