SNP Report
Basic Infomation
| Name | rs11698120 dbSNP |
|---|---|
| Location | chr:20,30481698 |
| Allele | T/G |
LD-proxy of rSNPs(r2>0.8) (count: 11)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r2 >=0.8.
| rs_ID | r2[population][source] |
|---|---|
| rs11697159 | 1.00[AFR][1000 genomes] |
| rs11698833 | 1.00[AFR][1000 genomes] |
| rs17093560 | 1.00[AFR][1000 genomes] |
| rs4911192 | 0.82[ASN][1000 genomes] |
| rs4911195 | 0.85[TSI][hapmap];1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs4911534 | 0.88[CHB][hapmap] |
| rs4911535 | 1.00[AFR][1000 genomes] |
| rs4911539 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs4911540 | 1.00[AFR][1000 genomes];0.81[AMR][1000 genomes] |
| rs8120234 | 0.88[CHB][hapmap];0.80[CHD][hapmap];0.82[JPT][hapmap] |
| rs8124268 | 0.82[ASN][1000 genomes] |
rSNP related genes
| Symbol | Regulation type |
|---|---|
| TTLL9 | Distal transcriptional regulation |
| TTLL9 | RNA binding protein mediated regulation |
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 5)
Copyright: Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences Feedback
Last update: March 26, 2014