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rVarBase
SNP Report
Basic Infomation
Name
rs4911539  
dbSNP
Location
chr:20,30514545
Allele
T/A
LD-proxy of rSNPs(r
2
>0.8) (count: 10)
The LD data used here is based on HapMap rel#27 and 1000 Genomes phase I data. LD SNP pairs were selected with a threshold r
2
>=0.8.
rs_ID
r
2
[population][source]
rs11697159
1.00[AFR][1000 genomes]
rs11698120
1.00[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11698833
1.00[AFR][1000 genomes]
rs17093560
1.00[AFR][1000 genomes]
rs4911195
1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4911535
1.00[AFR][1000 genomes]
rs4911540
0.93[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6061032
0.85[CHB][hapmap]
rs7271152
0.81[CHB][hapmap]
rs9967912
0.80[CHB][hapmap]
rSNP related genes
Symbol
Regulation type
PDRG1
Distal transcriptional regulation
TTLL9
RNA binding protein mediated regulation
rSNP related regulatory elements
Proximal transcriptional regulation
Distal transcriptional regulation
Post-transcriptional regulation:within mature miRNA
Post-transcriptional regulation: associated with RNA binding protein
eQTL evidence (count: 0)